clustering of genome segments

Question

[Bogdan]

Dear all,

Has anyone used/ found algorithms that do cluster genome segments ?

For example, shall we have 4 genome segments of 1kb each :

**genome segment A : chr 1: 1000 - 2000 : DNA methylation + histone acetylation** 

**genome segment B : chr 2 : 5000 - 6000 : DNA methylation** 

**genome segment C : chr 3 : 8000 - 9000 : histone acetylation + histone methylation`** 

**genome segment  D : chr 4:  13 000 - 14 000 : DNA methylation + histone methylation**

the clustering algorithm may produce :

**a cluster X : that cluster genome segments A , B, D**

**a cluster Y : that contains genome segment C**

Please let me know. Thanks,

Bogdan