Hello, I am trying to analyze my data with this method: https://www.ebi.ac.uk/sites/ebi.ac.uk/files/content.ebi.ac.uk/materials/2014/140217_AgriOmics/dan_bolser_snp_calling.pdf
I made bcf files with "samtools mpileup" command. However, both bcftools and vcftools are not installed in the server computer. I tried to install on the server, but the error occurs: -bash: /usr/bin/yum: /usr/bin/python: bad interpreter: Permission denied
It seems I have no permission to install using yum. Is there another way to analyze SNPs with only samtools except for bcftools and vcftools?