STAR error MAC Catalina RNA seq
Entering edit mode
10 days ago

hi everyone, I'm thankful to person who has help me with my previous error in my work. And now ı have a new one, I need STAR tool for RNA-seq alignment. I't's almost been 4 days ım straggle with this problem. I read and did everything done in the past but unfortunately my problem is still alive. ı used clang, LLVM, cling as an compilers, they're doest work for my problem. I couldn't be able to run STAR tool on Mac Catalina. Could someone give me an advise about this problem. Thank you for your time and interest.

(base) Sehribans-MacBook-Air:STAR-2.7.10b sehriban$ brew install clang-14
Running `brew update --auto-update`...
==> Auto-updated Homebrew!
Updated 1 tap (homebrew/core).

You have 1 outdated formula installed.
You can upgrade it with brew upgrade
or list it with brew outdated.

Warning: No available formula with the name "clang-14". Did you mean clang-format?
==> Searching for similarly named formulae...
This similarly named formula was found:
clang-format ✔
To install it, run:
  brew install clang-format ✔
==> Searching for a previously deleted formula (in the last month)...
Error: No previously deleted formula found.
==> Searching taps on GitHub...
Error: No formulae found in taps.
(base) Sehribans-MacBook-Air:STAR-2.7.10b sehriban$ 
Bionformatics • 259 views
Entering edit mode
10 days ago
ATpoint 66k

Please confirm that you are precisely following the official brew instructions for STAR on Mac: which does not instruct to install what you try to do. You have a conda environment activated, I anyway would recommend to conda deactivate that before doing brew, things could be conflicting. Best to keep package managers strictly separated.

Entering edit mode

Thanks a lot for your respond. I did't what you said, unfortunately, it's still given error.


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