STAR error MAC Catalina RNA seq
Entering edit mode
7 days ago

hi everyone, I'm thankful to person who has help me with my previous error in my work. And now ı have a new one, I need STAR tool for RNA-seq alignment. I't's almost been 4 days ım straggle with this problem. I read and did everything done in the past but unfortunately my problem is still alive. ı used clang, LLVM, cling as an compilers, they're doest work for my problem. I couldn't be able to run STAR tool on Mac Catalina. Could someone give me an advise about this problem. Thank you for your time and interest.

(base) Sehribans-MacBook-Air:STAR-2.7.10b sehriban$ brew install clang-14
Running `brew update --auto-update`...
==> Auto-updated Homebrew!
Updated 1 tap (homebrew/core).

You have 1 outdated formula installed.
You can upgrade it with brew upgrade
or list it with brew outdated.

Warning: No available formula with the name "clang-14". Did you mean clang-format?
==> Searching for similarly named formulae...
This similarly named formula was found:
clang-format ✔
To install it, run:
  brew install clang-format ✔
==> Searching for a previously deleted formula (in the last month)...
Error: No previously deleted formula found.
==> Searching taps on GitHub...
Error: No formulae found in taps.
(base) Sehribans-MacBook-Air:STAR-2.7.10b sehriban$ 
Bionformatics • 247 views
Entering edit mode
7 days ago
ATpoint 66k

Please confirm that you are precisely following the official brew instructions for STAR on Mac: which does not instruct to install what you try to do. You have a conda environment activated, I anyway would recommend to conda deactivate that before doing brew, things could be conflicting. Best to keep package managers strictly separated.

Entering edit mode

Thanks a lot for your respond. I did't what you said, unfortunately, it's still given error.


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