For H.sapiens , after downloading the index file via the link and unzip/untar, I ran the .sh file with the bash command.
bash make_grch38_tran.sh
Everything was ok until generation 4, when it hits the generation 4 I got the index building failed error as you can see in the output image.
I thought it might a connection error because mine is not stable, so I tried again but it kept giving the same error. Could you please help me with that?
Thanks for your reply, I'm new to this stuff and thought I had to run the .sh file first to be able to use the indexes.