How to find miRNAs targeting genes using a list in R?
0
1
Entering edit mode
8 weeks ago

Hi,

I am working with NanoString targeted panel with 800 miRNAs, processed, normalized, and found differentially expressed miRNAs between 2 groups of interest. 50 miRNAs passed after applying stringent statistical cut-off. I am interested in identifying miRNAs targeting gene(s) using this list in R.

I sometime refer, web-based miRNA databases like the web-based miRNA data miRBase, PicTar, PITA, miRDB, TarBase, TarScan, etc., to investigate a couple of miRNAs manually. Is there a way to use this list of miRNAs and map or targeting genes?

Thank you in advance.

Thank you,

Toufiq

PicTar miRBase miRNA PITA R • 130 views
ADD COMMENT

Login before adding your answer.

Traffic: 785 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6