Star indexing
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10 weeks ago

I've been trying to STAR index a reference sequence file but I am not getting a fa fai file. These are the files I am getting: enter image description here

This is the command that I ran: enter image description here

indexing star • 298 views
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Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the code formatting option shown below), or use a GitHub Gist if the content volume exceeds allowed length here.

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I would also apply the suggestion in the warning if I was you and generally remove all whitespaces and non-standard characters from file names such as this (1).

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10 weeks ago
GenoMax 125k

If you need a .fai index then you will have to use samtools faidx your.fa.

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