Star indexing
1
0
Entering edit mode
8 weeks ago

I've been trying to STAR index a reference sequence file but I am not getting a fa fai file. These are the files I am getting:

This is the command that I ran:

indexing star • 276 views
0
Entering edit mode

Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the code formatting option shown below), or use a GitHub Gist if the content volume exceeds allowed length here.

0
Entering edit mode

I would also apply the suggestion in the warning if I was you and generally remove all whitespaces and non-standard characters from file names such as this (1).

0
Entering edit mode
8 weeks ago
GenoMax 124k

If you need a .fai index then you will have to use samtools faidx your.fa.