Hi all, I have 3 metagenomic assembled phage genomes from NCBI with their respective SRA reads downloaded. I just want to confirm the presence of these viruses in these SRA files. I was able to do that to 2 of them by just building the scaffolds with Spades (metaviral mode). I'm having trouble finding the third virus in its respective SRA data, I've tried: Spades, Bowtie (mapping the reads to the assembled genome) and VirSorter with no results. I do not know if I could do something else or there is some kind of error in the information provided by the NCBI. Any clues?
It seems like a database error indeed
Consider emailing SRA support and the submitter's with relevant information. This may get fixed eventually.