Entering edit mode
16 months ago
barzilayrom1
▴
10
Hi there,
I have paired-end reads and I want to filter them such that reads that correspond to any of the following flag values will be retained: 83, 99, 147, 163.
I saw one tutorial (link) about how to select all reads with one specific flag value using samtools view
, which I can basically implement to select each one of my desired flag values separately, but wondered if there is a cleaner way to do it?
Any suggestions will be appreciated!