Hello. I am pretty new to the programming world and need a bit of help with plotting HiChIP data. The tutorial for HiChIP (https://hichip.readthedocs.io/en/latest/plot_arc.html) is out of date and I have gotten all the way up to plotting the data on my own but the package Sushi is no longer in use. The tutorial is having me use Sushi for the following commands "plotBedgraph" and "plotBedpe". Any advice with other packages/commands to use instead of Sushi?
as a note, when going to Sushis GitHub, it says PlotGardener is the go to now, however it seems like plotgardener doesnt do much for bedgraphs. Thanks!