How can I identify housekeeping genes from scRNA-seq data?

Question

[G96]

Hello everyone,

I have scRNA-seq data and I would like to verify the expression of some known housekeeping genes in my clusters. I did some ViolinPlots but I would like to obtain a real statistic related to their expression in different clusters. Is there a method as FindVariableFeatures() but for Non Variable ones?

Thank you!

Answer 1

[dariober]

Granted I don't have a lot of experience with scRNAseq, I would run a differential gene expression analysis between clusters and look at your genes of interest.