Transposon_ annotation
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8 weeks ago
Manaswini • 0

hiii. ... i was trying to annotate TE through EDTA. it generated a lot of files. can anyone please let me know which output fasta file contains all the TE(containing, intact+full+fractured TE).

TE annotation Tpase • 272 views
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Are you having problems opening the files and checking on your own?

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no, I can open the files, but unable to recognize which file contains all the TEs detected i.e. I need to identify the intact TEs(having full TIRs and coding region), full-length TEs(having only TIRs), and fragmented TEs.

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Did you look at the EDTA docs?

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Thank You. now I had a look at it and I got some of the information.

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