comparing the intron/ intron location with the reference transcript in the orthologous transcripts

Question

[praasu]

Hi Guys.

I have 7 (1 reference and 6 I have annotated) genome assembly and annotation. I have identified the orthologous transcripts between the reference and each species. Now, I want to compare the intron/ intron location with the reference transcript in the orthologous transcripts. Let me know if anybody has any suggestions.

Thank you very much in advance.