Hi , Im new to gnomad and genetics in general and i was wondering does the gnomad genome data that is downlaoded in the vcf format on variants contains information of what is the nearest gene and is the genomic location available also: exome/intron..... , if yes then what are the columns that contain this data? is it the INFO column?
Thank you very much,is the vep I the info column ? can maybe the nearest gene be: gene-STRING-Corresponding gene name of the highly affected transcript? And maybe do you know were I can get the information about the nearest gene to an SNP , if not in gnomad ?
if you have your own VCF then you should annotate it using VEP and
as you mentioned some variants are not even in gnomAD
Thank you just to make sure the VEP in info column will give me the location exone ,cdc,intron ,,,,,