Weighted coexpression network analysis

Question

[sharmatina189059]

Dear all This is the example dataset

sample ID SG000001234 SG00000155678   SG00000179101 treated/non-treated
A208-123  0.262828824 0.050368587 0.037100144 0
A73Z-123  0.445109948 0.388601678 0.260212297 1
A0RO-123  0.169501029 0.018730049 0.042140661 1
A0WT-123  0.25529793  0.032766221 0.060068625 0

and a another set of gene SG00000152684
SG00000159450
SG00000179363 SG00000159450
SG00000179363

How can we compute weighted co-expression network analysis to find if there is any corelation between these two list of genes?

[seidel]

Have you tried WCGNA (Weighted correlation network analysis)?