R package DESeq2 in R 3.5.1

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15 months ago

sehriban.buyukkilic ▴ 10

Hi everyone,

I'm trying install DESeq2 on R 3.5.1. There is some packages necessary for this package. I installed all packages on R, but its still giving the same error. I look at my computer, yes packages is there but I didn't get why doesn't work.

And also when I download packages, it gives this path '/private/var/folders/41/pxzfcbm9535351vmbbnmzj740000gn/T/RtmpvFXDaX/downloaded_packages' this location is it true or not? If not how can I chance location for download packages? Any ideas?

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ADD COMMENT • link updated 11 months ago by Ram 43k • written 15 months ago by sehriban.buyukkilic ▴ 10

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Update your version of R, 3.5.1 is ancient.

ADD REPLY • link 15 months ago by 4galaxy77 2.8k

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ı did it, thank you :)

ADD REPLY • link 15 months ago by sehriban.buyukkilic ▴ 10

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If you're having problem with dependencies you can try installing with conda, or you can just get it as a container.

ADD REPLY • link 15 months ago by barslmn ★ 2.1k

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There is a lot you're not telling us. Why are you using an old version? What version of DESeq2 are you trying to install? What is the error message? Have you tried installing an old version that matches R 3.5.1? What operating system are you using?

ADD REPLY • link 15 months ago by seidel 11k

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