Deleted:Publicly available control datasets
0
0
Entering edit mode
15 months ago
storm1907 ▴ 30

I am currently in desperate need of publicly available healthy men controls (from cancer researches) in GRCh38 build:

1) WES vcf files, preferably VEP annotated;

2) bedgraph files

I know there are gnomad v2 and ExAC datasets available, but there are many problems with liftover to hg38 and following annotation, so these are not suitable.

I also had issues with preparing and annotating gnomad v3 genome vcfs with VEP, so this format should be avoided too.

I heard there will be gnomad v4 exome dataset coming out soon, but is any exact date known?

And probably someone knows if any healthy control germline bedgraph dataset is available somewhere?

Thank you very much!

cancer dataset public bedgraph gnomad wes • 210 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 2534 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6