How to adjust graph in scanpy?
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8 days ago
bioinfo ▴ 20

Hello,

I am trying to create some violin plots with scanpy. However, the name of the axis of one of the plots is on top of another plot. The command that I am using is

sc.pl.violin(adata, ['n_genes_by_counts', 'total_counts', 'pct_counts_mt','pct_counts_ribo', 'pct_counts_hb'],
jitter=0.4, groupby = 'sample', rotation= 45)


I took the command from this tutorial https://nbisweden.github.io/workshop-scRNAseq/labs/compiled/scanpy/scanpy_01_qc.html and I noticed that they are having the same issue. It is the first plot on the 5.Plot QC part. The total counts legend is on top of the other graph. Is there a way to fix this?

Thank you

scanpy single-cell RNA-seq • 111 views