bgzip error 4

Question

[yb]

Hi there,

I am trying to combine all separated chrom vcf files to one vcf file using picard, and found out chr1 gz file was corrupted so removed it and tried to make a new gz file.

However, I'm having this error and I couldn't find any related posts.

$ bgzip -c chr1.vcf > chr1.vcf.gz
[E::bgzf_flush] File write failed (wrong size)
Could not write 65536 bytes: Error 4

Should I redownload the original chr1.vcf file? Thanks

[Pierre Lindenbaum]

I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of

gzip < chr1.vcf.gz > chr1.vcf.gz 

?