Entering edit mode
8 weeks ago
Neel ▴ 10
Error: unable to open file or unable to determine types for file
Hi i am trying to run this commands bedtools intersect -a Ec_k12.gff -b target_genes.txt -f 0.5 -wa -wb > genes_with_coordinates.bed and i am getting this error even after following given steps regarding this error on biostars/google. please help me if anyone know how to solve it? and the error is -
Error: unable to open file or unable to determine types for file / target_genes.tx - Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in the expected columns (e.g., cols 2 and 3 for BED).
thank you !
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