I have one question regarding SCENIC regulon prediction.
When I am trying pyscenic ctx CLI module with default parameters (which return only positive regulons) I am missing some regulons. However, when I am using the
--all_modules option I could see them in the results.
So what is the reason for pySCENIC predicting certain (positive) regulons only when enabling the
--all_modules option and not appearing with default parameters?
NOTE: I am using
I already posted an issue on the dedicated GitHub page. I am just curious if any of you faced a similar issue and could give me your opinion on this. Any help would be really appreciated.
Thank you so much in advance
Regards, Nitin N.