Entering edit mode
8 weeks ago
Elizabeth • 0
legacy = F data, does
workflow_type = HTSeq counts still work?
This is my code and it fails:
query <- GDCquery(project = "TCGA-BRCA", legacy = FALSE, data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantification", workflow.type="HTSeq - Counts", sample.type = "Primary Tumor")
I want to download only the raw data for protein coding genes.