Hi, I am trying to create a phenotype class file in cibersort. I want to know how to assign 1, 2 or 0 to cell types. I have different cells compared to the LM22 matrix. Any advice on how to build your own phenotype class file?
I am looking for advice on the same question. Please let me know if you have understood how to proceed and created a custom signature matrix file.
the CIBERSORTx website has all the information needed for formatting and using custom data sets. However, you first need to register to access the tutorials
If you follow this link, there is information regarding files formatting. (https://cibersortx.stanford.edu/upload.php).
Let me know if everything went fine.
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