Mapping with bbmap.sh
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Todat I'm trying to do a mapping with bbmap but I have a problem because in the results I have NaN% in everything, this is normal?
I'm using Ictalurus punctatus genome reference but my sample is pimelodus grosskopfii.
In the picture you can see the result.
Definitely not normal.
It doesn't seem that BBmap is taking any reads in. That's why your
num reads and
num bases are all zeros, which results in division by zero and outputs
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Please post your bbmap.sh command line.