I need to plot amino acid variant locations along a viral gene - I used to use Lollipops (https://github.com/joiningdata/lollipops). MutPlot seems similar (but that's only human data AFAIK https://github.com/VivianBailey/Mutplot)
However since Pfam went over to Interpro, really useful tools like Lollipops no longer work!
Can anyone suggest an R package or a web application that my student can use to make plots like this: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5016526/figure/F2/ please?
Do you know what specific information is Lollipop getting from Pfam? Looks like you can still use
MutPlotappears to be a R-shiny implementation of
lollipopso it is the same tool.