Could you please advise how to generate
multiqc report without merging R1 and R2 pair-end files?
My files look like
H_SAMPLE2_S29.trim_fin.R2_fastqc.zip. Multiqc generates
H_SAMPLE2_S29 stats in the report. But I expect to have stats for R1 and R2 separately.
v1.12 and v1.14 versions give the same result. I have tried
--file-list, but it didn't help. I also tried to rename zips, but, as I understand it, renaming the contents of the files in zips is required. Maybe there is an easy way to set a specific
--fn_as_s_name doesn't lead to the desired result.
Thank you in advance!