Entering edit mode
12 months ago
yas
▴
20
Hi, I used the command below to count the k-mer in a genome.
jellyfish count -m 3 -s 5M -L 1 B_amyloliquefaciens_CIAD-IB72.fna -o 3mers_jellyfish_output/B_amyloliquefaciens_CIAD-IB72_3.jf --text
and here is a part of the output that I get:
I want my output to only include the k-mers and their count like this:
Does anyone knows how can I modify the command that I used to get the output that I want?