I'm trying to do a Gene Ontology with the Gost function. I'm working on sheep, which I believe can be referred to as "oaries" or "oarambouillet".
I'm facing a bit of an issue, as when I'm trying to run the gost I get this error:
No results to show Please make sure that the organism is correct or set significant = FALSE
I've tried both organisms, as well as setting significant to false, but it's not working. One funny bit though is that if I ask the function to generate a short link, the query runs on the GO website.
Does anyone knows why it runs on the website but not in R ?
GO_Analysis=gost(query=Result_table_B_ASHR$ID, organism = "oaries", ordered_query = TRUE, multi_query = FALSE, significant = TRUE, exclude_iea = FALSE, measure_underrepresentation = FALSE, evcodes = TRUE, domain_scope = "known", correction_method = "fdr", user_threshold = 0.05, custom_bg = NULL, numeric_ns = "ENTREZGENE_ACC", sources =c("GO:MF","GO:BP","KEGG", "GO:CC"), as_short_link = FALSE)
Thanks a lot !