I've been using ClusterProfiler for a while now. I notice in the most recent version, when I plot KEGG pathways, every pathway name is followed by "– Mus musculus (house mouse)". This is really irritating and looks very messy. Can this extra text of the organism name be removed in some easy way? Examples of old and new plots below: Thanks for any help!
Is there a problem in using program version that produced your top plot?
Unless there is known bug in a program, or a super-useful feature in a newer version, I never update packages. At a risk of sounding like an old crankster, it is at best even odds that some good will come from updating as it is that a perfectly well-behaved feature will start acting out.
Unfortunately yes, there does seem to be a problem with using the older version - when I came to do more analysis yesterday, the enrichKEGG function didn't work (even though all the other "enrich" functions did). I tried a bunch of other stuff but it only started working when I updated the package.