0
votes
1
reply
16
views
7
votes
5
replies
4.5k
views
0
votes
1
reply
16
views
5
votes
3
replies
475
views
updated 1 hour ago by
colindaven
6.4k
•
written 5 days ago by
kirillkirilenko
▴
40
0
votes
0
replies
12
views
1 hour ago by
SHREYA
•
0
0
votes
3
replies
264
views
0
votes
0
replies
15
views
1
vote
3
replies
90
views
795
votes
167
replies
141k
views
109 follow
updated 3 months ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
3
replies
71
views
0
votes
1
reply
71
views
updated 3 hours ago by
Michael
54k
•
written 4 hours ago by
michael.flower.14
▴
180
0
votes
2
replies
59
views
0
votes
0
replies
24
views
4 hours ago by
Susmita Mandal
▴
110
0
votes
1
reply
63
views
updated 1 hour ago by
GenoMax
141k
•
written 5 hours ago by
sarahawan92
▴
10
0
votes
3
replies
424
views
updated 5 hours ago by
atharvakarkare14
▴
10
•
written 4 days ago by
Ashok
•
0
0
votes
1
reply
59
views
0
votes
1
reply
89
views
updated 5 hours ago by
Basti
★
2.0k
•
written 7 hours ago by
qudrat.nii
▴
10
0
votes
0
replies
64
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
8 hours ago by
yxwucq
•
0
0
votes
0
replies
47
views
0
votes
0
replies
36
views
1
vote
4
replies
162
views
0
votes
5
replies
196
views
updated 13 hours ago by
Pierre Lindenbaum
161k
•
written 16 hours ago by
Sd
•
0
0
votes
2
replies
125
views
16 hours ago by
sainavyav22
•
0
0
votes
1
reply
94
views
updated 17 hours ago by
Ram
43k
•
written 17 hours ago by
Cameron.walker9900
•
0
0
votes
8
replies
225
views
1
vote
4
replies
159
views
updated 18 hours ago by
Mensur Dlakic
★
27k
•
written 18 hours ago by
Κοσμάς
•
0
0
votes
0
replies
69
views
updated 18 hours ago by
Ram
43k
•
written 18 hours ago by
maxime.policarpo
▴
200
3
votes
3
replies
132
views
0
votes
0
replies
56
views
0
votes
2
replies
112
views
17 hours ago by
dxj294
•
0
0
votes
0
replies
59
views
3 hours ago by
Amélie
•
0
0
votes
0
replies
89
views
1
vote
3
replies
2.4k
views
updated 16 hours ago by
chrchang523
10k
•
written 6.1 years ago by
Ginevra
▴
10
2
votes
1
reply
100
views
updated 20 hours ago by
ATpoint
81k
•
written 20 hours ago by
catherine.teyssier
•
0
2
votes
3
replies
152
views
5 hours ago by
michelafrancesconi9
▴
20
0
votes
0
replies
65
views
0
votes
4
replies
155
views
updated 21 hours ago by
Ram
43k
•
written 21 hours ago by
marco.barr
▴
60
2
votes
3
replies
291
views
updated 21 hours ago by
dsull
★
5.8k
•
written 13 days ago by
javanokendo
▴
60
0
votes
1
reply
105
views
0
votes
2
replies
153
views
3
votes
3
replies
176
views
0
votes
2
replies
127
views
updated 18 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
emmanouil.a
▴
120
0
votes
1
reply
96
views
0
votes
0
replies
70
views
3
votes
3
replies
697
views
1 day ago by
david.b.rombaut
▴
10
0
votes
0
replies
61
views
76
votes
71
replies
19k
views
19 follow
updated 1 day ago by
GenoMax
141k
•
written 6.2 years ago by
Kevin Blighe
87k
0
votes
0
replies
69
views
2
votes
3
replies
158
views
updated 3 hours ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
samuelkalandarov2002
▴
10
0
votes
0
replies
69
views
1 day ago by
Gerard
•
0
Recent Votes
Recent Locations •
All
United States, just now
Russia, 1 minute ago
Riyadh, 2 minutes ago
France, 3 minutes ago
Bologna, 3 minutes ago
Greece, 4 minutes ago
United States, 8 minutes ago
Recent Awards •
All
Popular Question to
pfee418
▴
10
Popular Question to
sarahmanderni
▴
100
Popular Question to
Michael
54k
Popular Question to
michael.flower.14
▴
180
Popular Question to
sarahawan92
▴
10
Teacher to
Mensur Dlakic
★
27k
Recent Replies
Comment: Plot DNA methylation level of DMR on the basis of certain genes
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
Yes you can remove those if you are only interested in annotated genes.
Comment: Help for coding: Trinity for differential gene expression studies
by
mchour
•
0
[This could help][1]
[1]: https://github.com/trinityrnaseq/RNASeq_Trinity_Tuxedo_Workshop/wiki/Trinity-De-novo-Transcriptome-Assembly-W…
Answer: How to compare the quality of assemblies
by
colindaven
6.4k
Are you sure you have looked into the HiFiasm output files (fasta and GFA) in detail and excluded non-primary contigs, hap1, hap2 and other…
Answer: How to identify gaps in a genome?
by
colindaven
6.4k
You can use seqtk to find gaps in a fasta
https://github.com/lh3/seqtk
seqtk gap
Usage: seqtk gap [-l 50] <in.fa>
Comment: some error in building kraken2 database
by
GenoMax
141k
> Obviously, running kraken2 after the build is complete does not produce the correct results
What do you get instead? Error/no output? Ha…
Comment: Failed kmer content
by
GenoMax
141k
Can you post a screenshot of what you are referring to? Why did you choose to "clean" your data?
FastQC analysis needs to be done keeping…
Comment: Help for coding: Trinity for differential gene expression studies
by
rhossen
•
0
It should be great if I have any assistance in my build up command using trinity package...
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
by
WouterDeCoster
47k
I want reads in a specific short interval, but if I do that with samtools view I also get reads that are spliced over that interval.
Answer: Help for coding: Trinity for differential gene expression studies
by
mchour
•
0
Hello,
I would recommend following RSEM wiki for more information about the options, or even run RSEM directly, not with the script provi…
Answer: WGCNA preservation analysis
by
Michael
54k
This seems like a model case for why we need better sustainable bioinformatics data and services. I don't know the exact background behind …
Comment: some error in building kraken2 database
by
Art1ess
•
0
this is names.dmp:![names.dmp][1]
and nodes.dmp![nodes.dmp][2]
[1]: /media/images/33cc9a8b-4818-48b4-913d-1c2b2185
[2]: /media/i…
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
by
Pierre Lindenbaum
161k
see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
by
Pierre Lindenbaum
161k
what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
Comment: interpretartion of a vcf file
by
Pierre Lindenbaum
161k
yes if there is more than one sample genotyped.
Traffic: 2718 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6