Entering edit mode
9 weeks ago
cogen859 • 0
I need to download counts and metadata for several datasets from ArrayExpress, I tried using
getAE function in ArrayExpress R package. But I keep getting this error:
StartTag: invalid element name Extra content at the end of the document Error: 1: StartTag: invalid element name 2: Extra content at the end of the document
Here is the command I used to download for these datasets:
mexp32 <- getAE("E-MEXP-32", type = "full") tabm1 <- getAE("E-TABM-1", type = "full") tabm1 <- getAE("E-TABM-1", type = "processed") mexp1422 = getAE("E-MEXP-1422", type = "full")
All of these dataset generated same error as above. In fact, last command is copied from the package vignette but I got same error in this too. I tried restarting my R session, it didn't help.
Please suggest how to overcome this issue? Thanks in advance for your suggestions.
Any update on this issue? Even the examples in the manual is not working.