R script error R aborted or encountered a fatal error
0
0
Entering edit mode
15 months ago

Hello everyone

I am trying to make a cluster dendrogram for my rna seq gene expression data.

This is the script am using

set.seed(786)

file_loc <- 'seeds.txt'
seeds_df <- read.table('data.txt', header =T)
str(seeds_df)
summary(seeds_df)
any(is.na(seeds_df))

seeds_label <- seeds_df$type.of.seed
seeds_df$type.of.seed <- NULL
str(seeds_df)

seeds_df_sc <- as.data.frame(scale(seeds_df))
summary(seeds_df_sc)

dist_mat <- dist(seeds_df_sc, method = 'euclidean')

hc <- hclust(dist_mat)
plot(hc)

but every time I am having this error:

R aborted or encountered a fatal error

Please help on this troubleshoot

linux R • 809 views
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1
Entering edit mode

Have you run the script line by line and found which line is causing the error?

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0
Entering edit mode

you may be producing a super large file and you computer can't handle it

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