Cannot install limma
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15 months ago
mropri ▴ 150

I removed limma from my packages and am trying to install in again. These are the warning I am getting when trying to install again:

package ‘limma’ successfully unpacked and MD5 sums checked

Warning: cannot remove prior installation of package ‘limma’

Warning: restored ‘limma’

In addition, when I do library(limma), I get:

Error in library(limma) : there is no package called ‘limma’

I am using Biocmanager to install it, and would aprreciate any help in this regard, thank you!

bioconductor limma • 1.4k views
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Entering edit mode
15 months ago
Corentin ▴ 610

Hi mropri,

It would be helpful if you could provide the command you used for the installation.

You can try to use the "force" option:

BiocManager::install(pkgs = "limma", force = TRUE)

Alternatively,you can manually uninstall limma, you can find the directories where your R packages are installed using:

.libPaths()

Delete the folder corresponding to the limma package, open R and try to install limma again.

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