Question

samtools and bowtie2 alignment

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12 months ago

qudrat.nii ▴ 10

I am using samtools on sam file from bowtie2 alignment. Can somebody tell me what is -F 1804 in samtools option?

alignment samtools bowtie2 • 641 views

ADD COMMENT • link updated 12 months ago by GenoMax 141k • written 12 months ago by qudrat.nii ▴ 10

score 1 · Answer 1 · 2023-04-14

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12 months ago

Pierre Lindenbaum 161k

ADD COMMENT • link 12 months ago by Pierre Lindenbaum 161k

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Thank you very much

ADD REPLY • link 12 months ago by qudrat.nii ▴ 10

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ADD REPLY • link 12 months ago by GenoMax 141k