I have bed file, bam file of human exome data and i wish to calculate the coverage per gene.
Are there any suggestions on how i should calculate the coverage per gene?
How to calculate average coverage for all genes
I like Mosdepth for coverage related issues.
I have used the mosdepth but it in the output in showing me the coverage of whole exons of genes. so how i can combine the coverage and get the coverage by gene wise not an exon wise?
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