Hi all, I do variant annotation using:
snpEff eff variants2_unzip.vcf > output_ann.vcf
java.lang.RuntimeException: Property: ‘variants2_unzip.vcf.genome’ not found.
snpeff -h and tried some options and still got the same error.
Would you please have a suggestion? Thank you so much.
snpEff eff hg19 variants2_unzip.vcf > output_ann.vcf doesn't have error but the ID column still missing with only dot and seems there is no difference with the original vcf file.