How to load inidividual ADT and RNA data to the same AnnData structure
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11 months ago

High guys, I'm a beginner using scanpy.

I'm trying to load som CITE-seq data but only find how to use the "sc.read_10x_h5" function which demands a 5h file.

The data I want to load is in the following structure:

ADT_barcodes.tsv.gz
ADT_counts.txt.gz
ADT_tags.tsv.gz 
barcodes.tsv.gz 
features.tsv.gz 
hashtags.csv.gz 
matrix.mtx.gz

Any suggestions on how I go about loading these files to the sam AnnData would be very very helpful.

Best
Pouria

python CITE-seq Scanpy • 264 views
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