Pre-processing for Agilent microarray data?
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9 months ago
survive • 0

Hi, is there any recommended pre-processing for Agilent microarray data?

I know there're frma and rma for Affymetrix microarray data, but I am not sure about Agilent.

I found a R package called AgiMicroRna but it seems to focus on processing data for analysis with the limma package.

Thank you.

affymetrix microarray gene agilent rna • 870 views
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Hi, thank you for the reply. Since I'm not familiar with Agilent data, what are the standard way of pre-processing the data? For example, should I be doing background correction?

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That is covered in the linked document when searching "Agilent".

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thank you!

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I was also looking for this. So we donot necessarily need the agilient R package to process the data?

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