Entering edit mode
11 days ago
survive • 0
Hi, is there any recommended pre-processing for Agilent microarray data?
I know there're frma and rma for Affymetrix microarray data, but I am not sure about Agilent.
I found a R package called AgiMicroRna but it seems to focus on processing data for analysis with the limma package.
I think limma does pretty good : http://bioconductor.org/packages/devel/bioc/vignettes/limma/inst/doc/usersguide.pdf
Hi, thank you for the reply. Since I'm not familiar with Agilent data, what are the standard way of pre-processing the data? For example, should I be doing background correction?
That is covered in the linked document when searching "Agilent".