Can I send my PyMol results to a web-page as a result for a submitted query? If not, how can I get a 3d render of a protein as a result for a user submitted query?
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12 months ago

I am pretty new to bioinfo. I am working on a project just to polish my skills. I am coding on python

I am trying to make a website which will take input of a .pdb file and do some analysis on it and give result of the 3d structure with some labels and stuff.

If I can get the result on PyMol, how can I set it up such that the website will accept the .pdb file. Do whatever it needs to do on PyMol and send the result back to the wesite to be displayed as a result.

If there is any other way to do a similar thing I would very much appreciate the input.

Thank you very much.

protein-structure pymol protein pdb python • 1.2k views
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Sounds like you might be better off using something like Mol*: https://academic.oup.com/nar/article/49/W1/W431/6270780?login=false https://www.rcsb.org/3d-view/8D3R/1

Depends what analysis we're talking about though.

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Basically I only want to show bases with disulphide bonds.

like imagine I have a disulphide bond at 68 cys residue along with 145 cys. I want to show 10 amino acids up and down of the site along with a double bond sign joining them and labelled.

I want that in a 3d structure. How can I get that for any pdb file?

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