Entering edit mode
16 months ago
npavliukovec
•
0
Hello, I have to assembly using ABySS. But I could not get how I should calculate the optimal size of k-mer. So may be anyone know the method or program to calculate it?
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abyss-fac command, cuz it is not installed. In this way I am trying to find another way to calculate optimal k-mer size