Pre-processing for Agilent microarray data?

Question

[survive]

Hi, is there any recommended pre-processing for Agilent microarray data?

I know there're frma and rma for Affymetrix microarray data, but I am not sure about Agilent.

I found a R package called AgiMicroRna but it seems to focus on processing data for analysis with the limma package.

Thank you.

[Basti]

I think limma does pretty good : http://bioconductor.org/packages/devel/bioc/vignettes/limma/inst/doc/usersguide.pdf

[survive]

Hi, thank you for the reply. Since I'm not familiar with Agilent data, what are the standard way of pre-processing the data? For example, should I be doing background correction?

[ATpoint]

That is covered in the linked document when searching "Agilent".

[solarchan7]

thank you!

[1769mkc]

I was also looking for this. So we donot necessarily need the agilient R package to process the data?