I need help with a methyl array data analysis
0
0
Entering edit mode
4 months ago
Ahmad ▴ 10

I have methyl array data in beta value of 2 groups of sample, how I can stat the downstream analysis by r to get DMPs and DMRs?

beta value

methyl_array DMPs DMRs beta_value r • 451 views
ADD COMMENT
0
Entering edit mode

Did you come across this?

Appropriate Pipeline for Methylation EPIC array analysis?

Regards, Prasun

ADD REPLY
0
Entering edit mode

Thank you, I will check it out

ADD REPLY
0
Entering edit mode

It seems the data appears to be in the beta value format (?), which represents the proportion of methylated probe intensity over the total (methylated + unmethylated) probe intensities. One note regarding your data, it is important to have replicates in your samples to increase the statistical power and robustness of your results.

Is your data in the dataframe (df)?

ADD REPLY
0
Entering edit mode

I actually have replicates.

thank you

ADD REPLY

Login before adding your answer.

Traffic: 1384 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6