snpEff error. No CDS checked
0
0
Entering edit mode
17 months ago
fifty_fifty ▴ 70

I am building a database for genome annotation of dogs' WES. I follow snpEff instructions from here My gtf, fasta, cds files are all from the same source here However, in Step 3 (checking database) I get an error that transcript IDs from the database (sample) 'XM_038535084.1' do not match any IDs from the fasta file '1_cds_XP_038396667'.

I wonder if I should rename the IDs from the CDS file just removing '1_cds_' part. Or might the issue be in something else?

snpEff gtf WES • 608 views
ADD COMMENT
0
Entering edit mode

Did you find a solution to this? I have the same issue.

ADD REPLY

Login before adding your answer.

Traffic: 2207 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6