I have a question, how can I find the variant allelic fraction from VEP file?
thanks in advanced
this is not a field provided by VEP.
OK how can I calculate it from the VEP file?
Correct way to calculate VAF (Variant allele fraction) from a VCF file
Ok but I have only VEP files I don't have vcf files
IMHO this is like asking for the cow when you only have a steak :-)
Cross-posted on bioinfo SE: https://bioinformatics.stackexchange.com/questions/21118/how-to-calculate-the-variant-allelic-fraction-vaf
OP, if we can't help you on one website because you don't have necessary data, we can't help you just because you ask a different forum that most people here are also on.
Login before adding your answer.
Use of this site constitutes acceptance of our User Agreement and Privacy