I am working on mining pseudogenes from Clarias sp. It is in the form of assembled scaffolds. I have masked the repeats using Repeat masker (Hard masking). I have predicted the parent protein data set using Augustus software. I need to know whether I need to mask pseudogenes from this parent protein set before going for tBLASTn. I am not able to download PPFinder which masks pseudogenes and iterate the gene prediction. Can anyone please the share the download link which is working?