Alternative To interactions comparison in limma in DESeq2
0
0
Entering edit mode
13 months ago
f2ff7a46 • 0

Is there an alternative to the make interactions comparison you are able to do in limma in DESeq2? i.e.

cont.matrix <- makeContrasts(
+ SvsUinWT=WT.S-WT.U,
+ SvsUinMu=Mu.S-Mu.U,
+ Diff=(Mu.S-Mu.U)-(WT.S-WT.U),
+ levels=design)

So I'm interested in getting the DESeq2 equivalent of the Diff = (Mu.S-Mu.U)-(WT.S-WT.U) comparison. Is this possible?

DESeq2 interactions • 412 views
ADD COMMENT
0
Entering edit mode

https://support.bioconductor.org/p/9143932/ -- see the lower parts where Michael Love answers, it comes down to numeric contrasts.

ADD REPLY

Login before adding your answer.

Traffic: 2688 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6