Saving results from yeastgenome.org blastp search
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Entering edit mode
3 months ago
dec986 ▴ 370

Hello,

I'm running a blastp search with a yeast protein on all available species on yeastgenome.org. However the output, while it looks good, would be much more useful if I could get the complete results in a JSON, CSV, or something like that.

For example, "gi|152149117|pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s R..." is truncated, and I don't know what the rest is.

The html would be 1047 pages long if printed, so I'll need to parse the output with perl or something.

How can I save/download/export the results to a JSON/CSV?

blast blastp • 257 views
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Entering edit mode
3 months ago
GenoMax 134k

Looks like yeastgenome site does not provide a way to export or save the results in any other format. You could do the search over at NCBI (limit search by using taxonomy to mimic what you are doing at YeastGenome) and save/export from there.

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