Differences in GTF files hg19 and hg38

Question

[heureuse]

Hello,

I have a script for gene annotation with hg19. Now I'm trying to annotate using hg38. The problem is I need the column level (level 1, level 2). I can't find it in the gtf file hg38.

Do you have any idea ?

Thank you

[heureuse]

Thank you very much. I get it from UCSC.

[GenoMax]

Since this is not an answer to the original question do not add it as such. I moved your last comment to the correct spot it should have been under. Use ADD REPLY/COMMENT when responding to existing comments/answers.

ADD ANSWER is for adding a new answer for the original question.

[heureuse]

Thank you. Noted

Answer 1

[GenoMax]

Not sure where you got your GTF for GRCh38 from but one from GENCODE has the level info you are looking for.

chr1    HAVANA  gene    11869   14409   .       +       .       gene_id "ENSG00000290825.1"; gene_type "lncRNA"; gene_name "DDX11L2"; level 2; tag "overlaps_pseud
ogene";

[heureuse]

Thank you very much. I get it from UCSC.