Illumina Genomestudio Cnv And Loh Analysis Pieline

Question

[Joel]

I am doing Illumina SNP array analysis using Illumina Genome Studio software genotyping module. I am new to bioinformatics. Can anyone please help me with a workflow or pipeline for CNV and LOH analysis using Genome Studio software?

[Istvan Albert]

Please post a specific question not a generic statement or call for help.

Answer 1

[Sean Davis]

I would suggest not limiting yourself to GenomeStudio. Take a look at Partek, dChip, or Biodiscovery's Nexus software for alternatives. There are also several algorithms available via the Bioconductor project.